RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02600.1 View Network Show in Genome Browser |
| Other Names | Os03g0117200 |
| Description | riboflavin biosynthesis protein ribD, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 960445-962656 Nucleotide Length: 1272 |
| Protein-coding | LOC_Os03g02600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g36340 LOC_Os01g55974 LOC_Os01g51540 LOC_Os01g65410 LOC_Os01g14630 |
| Downstream Genes | LOC_Os12g35580 LOC_Os04g42000 LOC_Os05g38570 LOC_Os09g04210 LOC_Os03g20570 LOC_Os07g14150 LOC_Os03g45400 LOC_Os03g52840 LOC_Os11g26860 LOC_Os03g61810 LOC_Os12g22030 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00740 rn01100 |
| Metacyc Pathways | RIBOSYN2-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02600.1 |
| Rice Genome Annotation | LOC_Os03g02600.1 |
| Ricechip | LOC_Os03g02600.1 |
| KEGG | osa:4331409 dosa:Os03t0117200-01 |
| Entrez-Gene | 4331409 |