RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02680.3 View Network Show in Genome Browser |
| Other Names | Os03g0118400 |
| Description | cyclin-dependent kinase A-1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 997661-1001243 Nucleotide Length: 828 |
| Protein-coding | LOC_Os03g02680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g63710 LOC_Os01g36390 LOC_Os02g05630 LOC_Os02g04240 LOC_Os02g30800 LOC_Os02g54490 LOC_Os02g15594 LOC_Os02g55300 LOC_Os02g55410 LOC_Os01g16650 LOC_Os02g55560 More.. |
| Downstream Genes | LOC_Os03g05300 LOC_Os04g47580 LOC_Os12g31810 LOC_Os05g39850 LOC_Os12g39210 LOC_Os04g10650 LOC_Os05g32600 LOC_Os11g29380 LOC_Os06g48300 LOC_Os06g08790 LOC_Os03g03150 More.. |
| Reference | |
|---|---|
| PubMed | 9880343 1376401 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02680.3 |
| Rice Genome Annotation | LOC_Os03g02680.3 |
| Ricechip | LOC_Os03g02680.3 |
| KEGG | osa:4331415 dosa:Os03t0118400-01 |
| Entrez-Gene | 4331415 |