RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02710.1 View Network Show in Genome Browser |
| Other Names | Os03g0118800 |
| Description | hydroxymethylglutaryl-CoA synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 1015290-1020208 Nucleotide Length: 1392 |
| Protein-coding | LOC_Os03g02710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04710 LOC_Os02g01920 LOC_Os01g04260 LOC_Os02g32490 LOC_Os02g04690 LOC_Os02g46990 LOC_Os01g66180 LOC_Os02g19770 LOC_Os02g32160 LOC_Os01g11300 LOC_Os02g01510 More.. |
| Downstream Genes | LOC_Os09g07830 LOC_Os05g34770 LOC_Os07g10600 LOC_Os07g40580 LOC_Os03g29170 LOC_Os12g32240 LOC_Os03g55150 LOC_Os05g26660 LOC_Os07g02210 LOC_Os09g31970 LOC_Os08g25090 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5522 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00072 rn00280 rn00650 rn00900 rn01100 rn01110 |
| Metacyc Pathways | PWY-922 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02710.1 |
| Rice Genome Annotation | LOC_Os03g02710.1 |
| Ricechip | LOC_Os03g02710.1 |
| KEGG | osa:4331418 dosa:Os03t0118800-01 |
| Entrez-Gene | 4331418 |