RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g03164.2 View Network Show in Genome Browser |
| Other Names | Os03g0123500 |
| Description | homeobox protein knotted-1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 1340067-1345295 Nucleotide Length: 945 |
| Protein-coding | LOC_Os03g03164 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g63780 LOC_Os01g54620 LOC_Os02g08544 LOC_Os01g71474 LOC_Os01g19694 LOC_Os02g58720 LOC_Os01g11710 LOC_Os01g25560 LOC_Os01g71280 LOC_Os01g18240 LOC_Os01g39830 More.. |
| Downstream Genes | LOC_Os03g58640 LOC_Os07g37640 LOC_Os06g11490 LOC_Os03g03260 LOC_Os08g08820 LOC_Os08g04190 LOC_Os07g08330 LOC_Os08g39070 LOC_Os11g02110 LOC_Os05g32500 LOC_Os05g48270 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g03164.2 |
| Rice Genome Annotation | LOC_Os03g03164.2 |
| Ricechip | LOC_Os03g03164.2 |
| KEGG | osa:4331449 dosa:Os03t0123500-01 |
| Entrez-Gene | 4331449 |