RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g03990.1 View Network Show in Genome Browser |
| Other Names | Os03g0131900 |
| Description | signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 1817496-1818855 Nucleotide Length: 1167 |
| Protein-coding | LOC_Os03g03990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g22260 LOC_Os01g56320 |
| Downstream Genes | LOC_Os10g17770 LOC_Os07g46590 LOC_Os07g31450 LOC_Os03g12570 LOC_Os11g34300 LOC_Os07g43360 LOC_Os06g08480 LOC_Os04g01130 LOC_Os04g38850 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g03990.1 |
| Rice Genome Annotation | LOC_Os03g03990.1 |
| Ricechip | LOC_Os03g03990.1 |
| KEGG | osa:4331514 dosa:Os03t0131900-01 |
| Entrez-Gene | 4331514 |