RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04000.1 View Network Show in Genome Browser |
| Other Names | Os03g0132000 |
| Description | AMP-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 1822239-1826140 Nucleotide Length: 1659 |
| Protein-coding | LOC_Os03g04000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g37960 LOC_Os01g47760 |
| Downstream Genes | LOC_Os07g32670 LOC_Os03g59080 LOC_Os05g48930 LOC_Os05g04530 LOC_Os10g40360 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00592 rn01100 rn00130 rn00360 rn00940 rn01110 |
| Metacyc Pathways | PWY1F-FLAVSYN PWY-361 PWY-5754 PWY-6435 PWY-6673 PWY-6320 PWY-1121 PWY-5135 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04000.1 |
| Rice Genome Annotation | LOC_Os03g04000.1 |
| Ricechip | LOC_Os03g04000.1 |
| KEGG | osa:4331515 dosa:Os03t0132000-01 |
| Entrez-Gene | 4331515 |