RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04340.1 View Network Show in Genome Browser |
| Other Names | Os03g0136200 |
| Description | C-methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2003110-2004984 Nucleotide Length: 1092 |
| Protein-coding | LOC_Os03g04340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51490 LOC_Os01g57620 LOC_Os01g40660 |
| Downstream Genes | LOC_Os12g10200 LOC_Os11g35340 LOC_Os10g34740 LOC_Os07g08200 LOC_Os06g06730 LOC_Os06g05900 LOC_Os04g40530 LOC_Os04g31000 LOC_Os12g40760 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00100 rn01110 |
| Metacyc Pathways | PWY-2541 PWY0-541 PWY-4942 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04340.1 |
| Rice Genome Annotation | LOC_Os03g04340.1 |
| Ricechip | LOC_Os03g04340.1 |
| KEGG | osa:4331540 dosa:Os03t0136200-01 |
| Entrez-Gene | 4331540 |