RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04410.1 View Network Show in Genome Browser |
| Other Names | Os03g0136900 |
| Description | aconitate hydratase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2026677-2033641 Nucleotide Length: 2961 |
| Protein-coding | LOC_Os03g04410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16900 LOC_Os02g10070 LOC_Os02g38200 LOC_Os01g38970 LOC_Os01g51380 LOC_Os01g46070 LOC_Os02g48620 LOC_Os01g62840 LOC_Os02g32030 LOC_Os01g47600 LOC_Os02g32490 More.. |
| Downstream Genes | LOC_Os11g33240 LOC_Os12g01530 LOC_Os06g37180 LOC_Os11g14220 LOC_Os03g51600 LOC_Os07g37310 LOC_Os11g01530 LOC_Os07g38730 LOC_Os05g49880 LOC_Os08g29520 LOC_Os03g11970 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00020 rn00630 rn00720 rn01100 rn01110 rn01120 rn01210 |
| Metacyc Pathways | TCA ANARESP1-PWY P23-PWY P105-PWY LYSINE-AMINOAD-PWY LEUSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04410.1 |
| Rice Genome Annotation | LOC_Os03g04410.1 |
| Ricechip | LOC_Os03g04410.1 |
| KEGG | osa:4331547 dosa:Os03t0136900-01 |
| Entrez-Gene | 4331547 |