RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04770.1 View Network Show in Genome Browser |
| Other Names | Os03g0141200 |
| Description | beta-amylase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2272965-2276401 Nucleotide Length: 1674 |
| Protein-coding | LOC_Os03g04770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g53860 LOC_Os02g19150 LOC_Os01g42730 LOC_Os01g46080 LOC_Os01g52010 |
| Downstream Genes | LOC_Os09g12540 LOC_Os10g25030 LOC_Os03g05310 LOC_Os12g32970 LOC_Os04g10350 LOC_Os04g57440 LOC_Os07g46570 LOC_Os08g38700 LOC_Os06g21380 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-842 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04770.1 |
| Rice Genome Annotation | LOC_Os03g04770.1 |
| Ricechip | LOC_Os03g04770.1 |
| KEGG | osa:4331577 dosa:Os03t0141200-01 |
| Entrez-Gene | 4331577 |