RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g04970.1 View Network Show in Genome Browser |
| Other Names | Os03g0143400 |
| Description | T-complex protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2401014-2406760 Nucleotide Length: 1734 |
| Protein-coding | LOC_Os03g04970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g54060 LOC_Os02g32030 LOC_Os02g53420 LOC_Os03g02260 LOC_Os02g33030 LOC_Os02g52940 LOC_Os01g53900 LOC_Os02g05340 LOC_Os01g62840 LOC_Os01g38970 LOC_Os02g32430 More.. |
| Downstream Genes | LOC_Os03g25050 LOC_Os07g44740 LOC_Os06g09679 LOC_Os10g41710 LOC_Os09g26730 LOC_Os06g09688 LOC_Os04g02820 LOC_Os03g50510 LOC_Os12g19590 LOC_Os08g19850 LOC_Os08g32840 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g04970.1 |
| Rice Genome Annotation | LOC_Os03g04970.1 |
| Ricechip | LOC_Os03g04970.1 |
| KEGG | osa:4331590 dosa:Os03t0143400-01 |
| Entrez-Gene | 4331590 |