RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g05110.1 View Network Show in Genome Browser |
| Other Names | Os03g0144800 |
| Description | xyloglucan galactosyltransferase KATAMARI1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2486920-2489500 Nucleotide Length: 1815 |
| Protein-coding | LOC_Os03g05110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g01760 LOC_Os02g09430 LOC_Os01g70200 LOC_Os01g69220 LOC_Os01g01780 |
| Downstream Genes | LOC_Os07g37960 LOC_Os04g57510 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR415 osa-miR5512a osa-miR5512b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00563 rn01100 |
| Metacyc Pathways | PWY-5338 PWY-2901 PWY-2881 PWY-2902 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g05110.1 |
| Rice Genome Annotation | LOC_Os03g05110.1 |
| Ricechip | LOC_Os03g05110.1 |
| KEGG | osa:4331598 dosa:Os03t0144800-01 |
| Entrez-Gene | 4331598 |