RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g05310.1 View Network Show in Genome Browser |
| Other Names | Os03g0146400 |
| Description | pheophorbide a oxygenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2576496-2580452 Nucleotide Length: 1965 |
| Protein-coding | LOC_Os03g05310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32120 LOC_Os01g66010 LOC_Os03g04770 LOC_Os01g49710 LOC_Os02g10720 LOC_Os01g29740 LOC_Os02g53860 LOC_Os01g49720 |
| Downstream Genes | LOC_Os07g37030 LOC_Os06g48510 LOC_Os10g25030 LOC_Os10g25040 LOC_Os03g12030 LOC_Os04g32660 LOC_Os12g44310 LOC_Os05g34980 LOC_Os03g53300 LOC_Os10g38710 LOC_Os10g38580 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01110 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g05310.1 |
| Rice Genome Annotation | LOC_Os03g05310.1 |
| Ricechip | LOC_Os03g05310.1 |
| KEGG | osa:4331611 dosa:Os03t0146400-01 |
| Entrez-Gene | 4331611 |