RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g05780.1 View Network Show in Genome Browser |
| Other Names | Os03g0152400 |
| Description | 4-coumarate--CoA ligase-like 7, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2883005-2887922 Nucleotide Length: 1659 |
| Protein-coding | LOC_Os03g05780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43844 LOC_Os02g48670 LOC_Os01g73990 LOC_Os03g02030 LOC_Os02g26810 LOC_Os02g26770 LOC_Os01g27630 LOC_Os01g27210 LOC_Os01g73530 |
| Downstream Genes | LOC_Os07g32670 LOC_Os07g44140 LOC_Os07g44110 LOC_Os07g11870 LOC_Os06g09210 LOC_Os07g11970 LOC_Os07g23570 LOC_Os06g09220 LOC_Os10g10180 LOC_Os04g27020 LOC_Os07g11739 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00130 rn00360 rn00940 rn01100 rn01110 |
| Metacyc Pathways | PWY1F-FLAVSYN PWY-361 PWY-5754 PWY-6435 PWY-6673 PWY-6320 PWY-1121 PWY-5135 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g05780.1 |
| Rice Genome Annotation | LOC_Os03g05780.1 |
| Ricechip | LOC_Os03g05780.1 |
| KEGG | osa:4331650 dosa:Os03t0152400-01 |
| Entrez-Gene | 4331650 |