RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g05806.1 View Network Show in Genome Browser |
| Other Names | Os03g0152700 |
| Description | pseudouridine synthase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 2901596-2906614 Nucleotide Length: 1248 |
| Protein-coding | LOC_Os03g05806 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g54390 LOC_Os03g01830 LOC_Os01g31610 LOC_Os02g30840 LOC_Os02g02390 LOC_Os01g40640 LOC_Os01g72690 |
| Downstream Genes | LOC_Os12g37380 LOC_Os07g46600 LOC_Os04g56670 LOC_Os11g14230 LOC_Os11g38959 LOC_Os03g05980 LOC_Os09g01620 LOC_Os03g17920 LOC_Os03g52640 LOC_Os06g50360 LOC_Os11g41910 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g05806.1 |
| Rice Genome Annotation | LOC_Os03g05806.1 |
| Ricechip | LOC_Os03g05806.1 |
| KEGG | osa:4331652 dosa:Os03t0152700-01 |
| Entrez-Gene | 4331652 |