RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g06139.1 View Network Show in Genome Browser |
| Other Names | Os03g0157400 |
| Description | ABC-2 type transporter domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3075919-3085989 Nucleotide Length: 2316 |
| Protein-coding | LOC_Os03g06139 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g09810 LOC_Os02g49510 LOC_Os01g61044 LOC_Os03g05690 LOC_Os03g05310 LOC_Os02g56860 LOC_Os02g07160 LOC_Os01g28680 LOC_Os02g55770 LOC_Os02g55720 LOC_Os02g55710 More.. |
| Downstream Genes | LOC_Os10g14870 LOC_Os06g43700 LOC_Os06g42720 LOC_Os06g16420 LOC_Os09g26290 LOC_Os08g18044 LOC_Os06g14530 LOC_Os08g06250 LOC_Os03g12030 LOC_Os03g53300 LOC_Os10g40990 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5337a |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g06139.1 |
| Rice Genome Annotation | LOC_Os03g06139.1 |
| Ricechip | LOC_Os03g06139.1 |
| KEGG | osa:4331674 dosa:Os03t0157400-01 |
| Entrez-Gene | 4331674 |