RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g06620.1 View Network Show in Genome Browser |
| Other Names | Os03g0161800 |
| Description | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3338269-3341260 Nucleotide Length: 597 |
| Protein-coding | LOC_Os03g06620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01120 LOC_Os02g07160 LOC_Os02g26814 LOC_Os01g21380 |
| Downstream Genes | LOC_Os11g29370 LOC_Os03g15770 LOC_Os10g34040 LOC_Os10g02630 LOC_Os03g43360 LOC_Os07g46990 LOC_Os06g21600 LOC_Os04g04320 LOC_Os10g38660 LOC_Os06g30370 LOC_Os03g22810 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Metacyc Pathways | PWY-4361 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g06620.1 |
| Rice Genome Annotation | LOC_Os03g06620.1 |
| Ricechip | LOC_Os03g06620.1 |
| KEGG | osa:4331707 dosa:Os03t0161800-01 |
| Entrez-Gene | 4331707 |