RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g06900.1 View Network Show in Genome Browser |
| Other Names | Os03g0165000 |
| Description | DNA topoisomerase 3 protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3489869-3500130 Nucleotide Length: 2445 |
| Protein-coding | LOC_Os03g06900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71960 LOC_Os01g57110 LOC_Os02g47150 LOC_Os02g42230 LOC_Os02g53680 LOC_Os01g18860 LOC_Os02g56300 LOC_Os01g49680 LOC_Os03g01100 LOC_Os01g22010 LOC_Os02g52510 More.. |
| Downstream Genes | LOC_Os11g48090 LOC_Os06g45980 LOC_Os11g40150 LOC_Os07g30980 LOC_Os11g44910 LOC_Os12g31370 LOC_Os08g05840 LOC_Os09g36530 LOC_Os04g54340 LOC_Os09g24220 LOC_Os11g07870 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g06900.1 |
| Rice Genome Annotation | LOC_Os03g06900.1 |
| Ricechip | LOC_Os03g06900.1 |
| KEGG | osa:9269718 dosa:Os03t0165000-00 |
| Entrez-Gene | 9269718 |