RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g06960.1 View Network Show in Genome Browser |
| Other Names | Os03g0165800 |
| Description | vesicle-associated membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3551775-3554415 Nucleotide Length: 672 |
| Protein-coding | LOC_Os03g06960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g73230 LOC_Os02g10510 LOC_Os01g64280 LOC_Os01g51120 LOC_Os01g37980 LOC_Os01g13350 LOC_Os02g25580 LOC_Os02g11890 LOC_Os02g47870 LOC_Os01g01080 LOC_Os02g47440 More.. |
| Downstream Genes | LOC_Os06g09850 LOC_Os03g57760 LOC_Os08g18110 LOC_Os03g58840 LOC_Os07g09600 LOC_Os04g13470 LOC_Os07g14540 LOC_Os08g44430 LOC_Os06g04450 LOC_Os07g07000 LOC_Os06g02570 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g06960.1 |
| Rice Genome Annotation | LOC_Os03g06960.1 |
| Ricechip | LOC_Os03g06960.1 |
| KEGG | osa:4331733 dosa:Os03t0165800-01 |
| Entrez-Gene | 4331733 |