RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g07300.1 View Network Show in Genome Browser |
| Other Names | Os03g0169100 |
| Description | ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3713491-3717958 Nucleotide Length: 825 |
| Protein-coding | LOC_Os03g07300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g54590 LOC_Os01g57510 LOC_Os01g57560 LOC_Os02g06930 LOC_Os01g39970 LOC_Os01g26210 LOC_Os01g06240 LOC_Os01g57480 LOC_Os02g05820 LOC_Os01g12420 LOC_Os01g01740 More.. |
| Downstream Genes | LOC_Os04g01310 LOC_Os09g38850 LOC_Os09g30100 LOC_Os04g34330 LOC_Os04g03530 LOC_Os06g09230 LOC_Os07g31190 LOC_Os08g39220 LOC_Os09g38834 LOC_Os07g31130 LOC_Os12g16520 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00040 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY P21-PWY NONOXIPENT-PWY CALVIN-PWY DARABCAT-PWY PWY-1861 P185-PWY P122-PWY RIBITOLUTIL-PWY PWY-5723 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g07300.1 |
| Rice Genome Annotation | LOC_Os03g07300.1 |
| Ricechip | LOC_Os03g07300.1 |
| KEGG | osa:4331761 dosa:Os03t0169100-01 |
| Entrez-Gene | 4331761 |