RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g07430.1 View Network Show in Genome Browser |
| Other Names | Os03g0170400 |
| Description | protein kinase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3767426-3771557 Nucleotide Length: 1272 |
| Protein-coding | LOC_Os03g07430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g39290 LOC_Os02g05630 LOC_Os01g12720 LOC_Os02g15594 LOC_Os02g55560 LOC_Os01g54700 LOC_Os01g02040 LOC_Os02g08364 LOC_Os01g53640 LOC_Os02g12600 LOC_Os03g07300 More.. |
| Downstream Genes | LOC_Os05g12680 LOC_Os05g23950 LOC_Os04g14190 LOC_Os12g08070 LOC_Os06g48300 LOC_Os07g32380 LOC_Os04g14110 LOC_Os06g33549 LOC_Os04g37904 LOC_Os03g18150 LOC_Os06g44210 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5788 osa-miR1442 osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR3981-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g07430.1 |
| Rice Genome Annotation | LOC_Os03g07430.1 |
| Ricechip | LOC_Os03g07430.1 |
| KEGG | osa:4331772 dosa:Os03t0170400-01 |
| Entrez-Gene | 4331772 |