RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g07580.1 View Network Show in Genome Browser |
| Other Names | Os03g0172000 |
| Description | OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3859385-3864725 Nucleotide Length: 3018 |
| Protein-coding | LOC_Os03g07580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04320 LOC_Os02g38250 LOC_Os02g48740 LOC_Os01g33080 LOC_Os01g44394 LOC_Os02g32120 LOC_Os01g65220 LOC_Os01g62290 LOC_Os02g53230 LOC_Os02g53500 LOC_Os02g37580 More.. |
| Downstream Genes | LOC_Os11g42420 LOC_Os07g14280 LOC_Os03g61630 LOC_Os12g06890 LOC_Os10g33770 LOC_Os04g59494 LOC_Os12g06870 LOC_Os03g33580 LOC_Os07g38760 LOC_Os05g28510 LOC_Os08g07960 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g07580.1 |
| Rice Genome Annotation | LOC_Os03g07580.1 |
| Ricechip | LOC_Os03g07580.1 |
| KEGG | osa:4331780 dosa:Os03t0172000-01 |
| Entrez-Gene | 4331780 |