RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g07850.1 View Network Show in Genome Browser |
| Other Names | Os03g0174600 |
| Description | tRNA methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 3990105-3997815 Nucleotide Length: 1467 |
| Protein-coding | LOC_Os03g07850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g14580 LOC_Os02g19450 LOC_Os01g46610 LOC_Os02g33420 LOC_Os02g38200 LOC_Os02g14860 LOC_Os02g57660 LOC_Os01g34480 |
| Downstream Genes | LOC_Os08g23730 LOC_Os03g19930 LOC_Os12g37400 LOC_Os11g03430 LOC_Os12g03130 LOC_Os04g49860 LOC_Os11g29380 LOC_Os07g01820 LOC_Os03g24170 LOC_Os05g49760 LOC_Os08g33540 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1320-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g07850.1 |
| Rice Genome Annotation | LOC_Os03g07850.1 |
| Ricechip | LOC_Os03g07850.1 |
| KEGG | osa:4331793 dosa:Os03t0174600-01 |
| Entrez-Gene | 4331793 |