RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g07910.1 View Network Show in Genome Browser |
| Other Names | Os03g0175600 |
| Description | nitrilase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4024336-4028528 Nucleotide Length: 1056 |
| Protein-coding | LOC_Os03g07910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g42350 LOC_Os02g42330 LOC_Os01g70990 LOC_Os02g51370 LOC_Os01g61350 LOC_Os02g43180 LOC_Os02g40500 LOC_Os03g06960 LOC_Os02g01200 LOC_Os02g55990 |
| Downstream Genes | LOC_Os07g07260 LOC_Os12g10200 LOC_Os07g06600 LOC_Os08g45140 LOC_Os04g42930 LOC_Os11g43530 LOC_Os06g12030 LOC_Os11g43580 LOC_Os11g43550 LOC_Os04g54860 LOC_Os10g34170 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g07910.1 |
| Rice Genome Annotation | LOC_Os03g07910.1 |
| Ricechip | LOC_Os03g07910.1 |
| KEGG | osa:4331798 dosa:Os03t0175600-01 |
| Entrez-Gene | 4331798 |