RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g08070.3 View Network Show in Genome Browser |
| Other Names | Os03g0178100 |
| Description | copper-transporting ATPase PAA1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4119945-4126933 Nucleotide Length: 1839 |
| Protein-coding | LOC_Os03g08070 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32814 LOC_Os03g02860 LOC_Os01g55320 LOC_Os03g06080 LOC_Os01g20830 LOC_Os01g69080 LOC_Os01g68860 LOC_Os01g52160 |
| Downstream Genes | LOC_Os08g10480 LOC_Os09g20000 LOC_Os05g45820 LOC_Os08g01770 LOC_Os10g35940 LOC_Os04g56570 LOC_Os11g05010 LOC_Os03g26650 LOC_Os12g07370 LOC_Os04g41150 LOC_Os08g45180 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g08070.3 |
| Rice Genome Annotation | LOC_Os03g08070.3 |
| Ricechip | LOC_Os03g08070.3 |
| KEGG | osa:4331814 dosa:Os03t0178100-00 |
| Entrez-Gene | 4331814 |