RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g08140.1 View Network Show in Genome Browser |
| Other Names | Os03g0179000 |
| Description | tubulin--tyrosine ligase-like protein 12, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4150736-4157416 Nucleotide Length: 2613 |
| Protein-coding | LOC_Os03g08140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67510 LOC_Os02g56210 LOC_Os03g06190 LOC_Os01g05670 LOC_Os03g06900 LOC_Os01g56590 LOC_Os02g33450 LOC_Os02g55410 |
| Downstream Genes | LOC_Os03g08150 LOC_Os10g27174 LOC_Os10g41450 LOC_Os11g08330 LOC_Os07g07020 LOC_Os04g48410 LOC_Os11g48090 LOC_Os03g43020 LOC_Os05g48030 LOC_Os08g02130 LOC_Os10g30100 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g08140.1 |
| Rice Genome Annotation | LOC_Os03g08140.1 |
| Ricechip | LOC_Os03g08140.1 |
| KEGG | osa:4331821 dosa:Os03t0179000-01 |
| Entrez-Gene | 4331821 |