RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g08480.1 View Network Show in Genome Browser |
| Other Names | Os03g0183100 |
| Description | rho termination factor, N-terminal domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4359085-4363324 Nucleotide Length: 1128 |
| Protein-coding | LOC_Os03g08480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59510 LOC_Os01g09370 LOC_Os01g13150 LOC_Os01g11370 LOC_Os01g61550 LOC_Os03g01830 |
| Downstream Genes | LOC_Os06g05110 LOC_Os05g47850 LOC_Os05g11770 LOC_Os07g41830 LOC_Os09g30486 LOC_Os08g34010 LOC_Os06g22700 LOC_Os03g11230 |
| Reference | |
|---|---|
| PubMed | 12956528 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g08480.1 |
| Rice Genome Annotation | LOC_Os03g08480.1 |
| Ricechip | LOC_Os03g08480.1 |
| KEGG | osa:4331846 dosa:Os03t0183100-01 |
| Entrez-Gene | 4331846 |