RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g08530.1 View Network Show in Genome Browser
Other Names	Os03g0183600
Description	aminotransferase, classes I and II, domain containing protein, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 4384011-4389386 Nucleotide Length: 1512
Protein-coding	LOC_Os03g08530

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005739	mitochondrion	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g53450 LOC_Os02g56300 LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g70360 LOC_Os02g14110 LOC_Os03g04970 LOC_Os01g22520 LOC_Os02g37090
Downstream Genes	LOC_Os10g11200 LOC_Os10g41150 LOC_Os10g42090 LOC_Os03g14800 LOC_Os11g31640 LOC_Os06g35540 LOC_Os09g28050 LOC_Os07g05640 LOC_Os10g32550 LOC_Os04g58110 LOC_Os09g19734 More..

miRNA Regulations
miRNAs	osa-miR1436

Pathways
KEGG Pathways	rn00270 rn01100 rn01110 rn00250 rn00710 rn01120 rn00340
Metacyc Pathways	ETHYL-PWY PWY-4361 ALANINE-SYN2-PWY ALANINE-DEG3-PWY HISTSYN-PWY

Database Links
Gramene	LOC_Os03g08530.1
Rice Genome Annotation	LOC_Os03g08530.1
Ricechip	LOC_Os03g08530.1
KEGG	dosa:Os03t0183600-00
Entrez-Gene	9266500