RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g08754.1 View Network Show in Genome Browser
Other Names	Os03g0186600
Description	OsMADS47 - MADS-box family gene with MIKCc type-box, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 4519405-4525778 Nucleotide Length: 753
Protein-coding	LOC_Os03g08754

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0006412	translation	Biological Process	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0045182	translation regulator activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g55040 LOC_Os03g03610 LOC_Os02g35010 LOC_Os02g55880 LOC_Os02g38020 LOC_Os02g48840 LOC_Os02g44642 LOC_Os01g22710 LOC_Os02g14900 LOC_Os01g55820 LOC_Os02g58560 More..
Downstream Genes	LOC_Os07g01820 LOC_Os03g54160 LOC_Os11g10100 LOC_Os06g08380 LOC_Os11g40100 LOC_Os07g41370 LOC_Os11g47730 LOC_Os12g31350 LOC_Os08g41950 LOC_Os09g32948 LOC_Os06g27890 More..

miRNA Regulations
miRNAs	osa-miR5075

Reference
PubMed	16827922

Database Links
Gramene	LOC_Os03g08754.1
Rice Genome Annotation	LOC_Os03g08754.1
Ricechip	LOC_Os03g08754.1
KEGG	osa:4331872 dosa:Os03t0186600-01
Entrez-Gene	4331872