RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g09060.1 View Network Show in Genome Browser |
| Other Names | Os03g0190100 |
| Description | prenyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 4697225-4700186 Nucleotide Length: 1110 |
| Protein-coding | LOC_Os03g09060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g34390 LOC_Os02g52450 LOC_Os02g52430 LOC_Os01g52460 LOC_Os01g47350 LOC_Os02g16540 LOC_Os01g22520 |
| Downstream Genes | LOC_Os08g23320 LOC_Os07g38850 LOC_Os06g44840 LOC_Os05g28200 LOC_Os09g19734 LOC_Os05g06750 LOC_Os03g48040 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00130 rn01100 rn01110 rn00900 |
| Metacyc Pathways | PWY-5132 PWY-5365 PWY-5133 PWY-5123 POLYISOPRENSYN-PWY PWY-5121 PWY-5122 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g09060.1 |
| Rice Genome Annotation | LOC_Os03g09060.1 |
| Ricechip | LOC_Os03g09060.1 |
| KEGG | osa:4331897 dosa:Os03t0190100-01 |
| Entrez-Gene | 4331897 |