RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g10190.1 View Network Show in Genome Browser |
| Other Names | Os03g0198400 |
| Description | seryl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5167307-5170695 Nucleotide Length: 1338 |
| Protein-coding | LOC_Os03g10190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51830 LOC_Os02g33500 LOC_Os01g55820 LOC_Os02g27760 LOC_Os02g46130 LOC_Os02g56740 LOC_Os01g74650 LOC_Os01g59990 LOC_Os01g06020 LOC_Os02g48660 LOC_Os02g39700 More.. |
| Downstream Genes | LOC_Os08g42560 LOC_Os05g05840 LOC_Os12g25710 LOC_Os05g48620 LOC_Os08g19850 LOC_Os07g32450 LOC_Os11g04480 LOC_Os04g42010 LOC_Os10g41590 LOC_Os12g04240 LOC_Os12g37430 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | PWY0-901 TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g10190.1 |
| Rice Genome Annotation | LOC_Os03g10190.1 |
| Ricechip | LOC_Os03g10190.1 |
| KEGG | osa:4331954 dosa:Os03t0198400-01 |
| Entrez-Gene | 4331954 |