RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g10780.1 View Network Show in Genome Browser |
| Other Names | Os03g0205400 |
| Description | flap endonuclease, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5508792-5516943 Nucleotide Length: 4434 |
| Protein-coding | LOC_Os03g10780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56130 LOC_Os01g49680 LOC_Os01g04870 LOC_Os01g59140 LOC_Os02g30800 LOC_Os02g03340 LOC_Os02g58220 LOC_Os02g20430 LOC_Os02g53500 LOC_Os02g02510 LOC_Os03g01100 More.. |
| Downstream Genes | LOC_Os08g25060 LOC_Os04g42990 LOC_Os05g05260 LOC_Os05g05860 LOC_Os03g57870 LOC_Os03g15033 LOC_Os05g51480 LOC_Os11g28350 LOC_Os03g12610 LOC_Os09g02284 LOC_Os05g33240 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g10780.1 |
| Rice Genome Annotation | LOC_Os03g10780.1 |
| Ricechip | LOC_Os03g10780.1 |
| KEGG | osa:4331991 dosa:Os03t0205400-00 |
| Entrez-Gene | 4331991 |