RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g11050.1 View Network Show in Genome Browser |
| Other Names | Os03g0208900 |
| Description | mannose-1-phosphate guanyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5680647-5685409 Nucleotide Length: 1248 |
| Protein-coding | LOC_Os03g11050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62840 LOC_Os02g56740 LOC_Os01g46932 LOC_Os01g52250 |
| Downstream Genes | LOC_Os06g23160 LOC_Os03g16150 LOC_Os08g13930 LOC_Os03g52460 LOC_Os03g17000 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00040 rn00052 rn00500 rn00520 rn01100 rn01110 |
| Metacyc Pathways | PWY-3821 P61-PWY GALACTMETAB-PWY PWY-621 PWY-3801 SUCSYN-PWY COLANSYN-PWY PWY-5067 PWY3DJ-35471 PWY-6527 DTDPRHAMSYN-PWY UDPNACETYLGALSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g11050.1 |
| Rice Genome Annotation | LOC_Os03g11050.1 |
| Ricechip | LOC_Os03g11050.1 |
| KEGG | osa:4332014 dosa:Os03t0208900-01 |
| Entrez-Gene | 4332014 |