RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g11380.1 View Network Show in Genome Browser |
| Other Names | Os03g0212400 |
| Description | SNARE domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5860717-5863894 Nucleotide Length: 735 |
| Protein-coding | LOC_Os03g11380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02720 LOC_Os01g73230 LOC_Os02g57510 LOC_Os02g01332 LOC_Os02g47140 LOC_Os01g12880 LOC_Os02g14059 LOC_Os01g10820 LOC_Os02g27300 LOC_Os01g28450 LOC_Os02g28810 More.. |
| Downstream Genes | LOC_Os08g02410 LOC_Os08g02400 LOC_Os09g31180 LOC_Os12g03090 LOC_Os11g03400 LOC_Os08g44930 LOC_Os08g17600 LOC_Os04g50990 LOC_Os11g06740 LOC_Os03g25620 LOC_Os07g07000 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g11380.1 |
| Rice Genome Annotation | LOC_Os03g11380.1 |
| Ricechip | LOC_Os03g11380.1 |
| KEGG | osa:4332038 dosa:Os03t0212400-01 |
| Entrez-Gene | 4332038 |