RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g11420.1 View Network Show in Genome Browser |
| Other Names | Os03g0212800 |
| Description | Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 5876244-5883304 Nucleotide Length: 1566 |
| Protein-coding | LOC_Os03g11420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g02410 LOC_Os01g08750 LOC_Os02g16540 LOC_Os01g56330 LOC_Os03g02240 LOC_Os02g52500 LOC_Os02g37590 LOC_Os01g59150 LOC_Os02g43660 LOC_Os03g05500 |
| Downstream Genes | LOC_Os04g32950 LOC_Os11g29200 LOC_Os12g24250 LOC_Os05g04820 LOC_Os12g06670 LOC_Os03g49600 LOC_Os09g36860 LOC_Os12g40890 LOC_Os07g44180 LOC_Os09g39410 LOC_Os04g40730 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 rn00460 rn00940 |
| Metacyc Pathways | PWY-5176 PWY-4441 PWY-3121 PWY-6002 |
| Reference | |
|---|---|
| PubMed | 19587102 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g11420.1 |
| Rice Genome Annotation | LOC_Os03g11420.1 |
| Ricechip | LOC_Os03g11420.1 |
| KEGG | osa:4332041 dosa:Os03t0212800-01 |
| Entrez-Gene | 4332041 |