RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g11600.1 View Network Show in Genome Browser
Other Names	Os03g0215301,Os03g0215200
Description	YABBY domain containing protein, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 6041245-6048687 Nucleotide Length: 591
Protein-coding	LOC_Os03g11600

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005575	cellular_component	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g47600 LOC_Os02g15810 LOC_Os02g27060 LOC_Os02g55770 LOC_Os02g55720 LOC_Os02g55710 LOC_Os02g55670 LOC_Os02g55640 LOC_Os01g61610
Downstream Genes	LOC_Os08g01100 LOC_Os09g37250 LOC_Os08g12410 LOC_Os10g34710

miRNA Regulations
miRNAs	osa-miR2925

Reference
PubMed	21444646 21784949 12506001 21175891 14729915

Database Links
Gramene	LOC_Os03g11600.1
Rice Genome Annotation	LOC_Os03g11600.1
Ricechip	LOC_Os03g11600.1
KEGG	osa:4332058 dosa:Os03t0215200-00
Entrez-Gene	9267174