RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g11960.1 View Network Show in Genome Browser |
| Other Names | Os03g0219200 |
| Description | copper/zinc superoxide dismutase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 6271900-6275386 Nucleotide Length: 495 |
| Protein-coding | LOC_Os03g11960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g05670 LOC_Os02g53420 LOC_Os03g03910 LOC_Os02g07490 LOC_Os03g02260 LOC_Os02g44470 LOC_Os02g02400 LOC_Os01g62290 LOC_Os01g46070 LOC_Os02g07060 LOC_Os03g01530 More.. |
| Downstream Genes | LOC_Os05g25850 LOC_Os12g43630 LOC_Os11g04070 LOC_Os08g03640 LOC_Os06g23160 LOC_Os12g03880 LOC_Os06g36700 LOC_Os06g12530 LOC_Os03g43890 LOC_Os03g16920 LOC_Os12g43340 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | DETOX1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g11960.1 |
| Rice Genome Annotation | LOC_Os03g11960.1 |
| Ricechip | LOC_Os03g11960.1 |
| KEGG | osa:4332082 dosa:Os03t0219200-01 |
| Entrez-Gene | 4332082 |