RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g12290.1 View Network Show in Genome Browser
Other Names	Os03g0223400
Description	glutamine synthetase, catalytic domain containing protein, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 6457910-6462727 Nucleotide Length: 1074
Protein-coding	LOC_Os03g12290

Gene Ontology Classification
GO	Name	Type	Code
GO:0008152	metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005618	cell wall	Cellular Component	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005840	ribosome	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g48960 LOC_Os01g37760 LOC_Os01g27630 LOC_Os03g08440 LOC_Os01g27390 LOC_Os01g15260 LOC_Os03g04169 LOC_Os01g55830 LOC_Os01g27360 LOC_Os01g27340 LOC_Os01g27260 More..
Downstream Genes	LOC_Os04g48410 LOC_Os10g30090 LOC_Os03g45170 LOC_Os12g42850 LOC_Os10g31820 LOC_Os07g42450 LOC_Os05g04220 LOC_Os12g12860 LOC_Os07g44710 LOC_Os10g39410 LOC_Os09g38020 More..

Pathways
KEGG Pathways	rn00250 rn00330 rn00630 rn00910 rn01100 rn01120
Metacyc Pathways	PWY-381 GLNSYN-PWY PWY-3282 PWY-6549 PWY-5675 PWY490-3

Reference
PubMed	15574840 15918879 23251677 2577497

Database Links
Gramene	LOC_Os03g12290.1
Rice Genome Annotation	LOC_Os03g12290.1
Ricechip	LOC_Os03g12290.1
KEGG	osa:4332108 dosa:Os03t0223400-01
Entrez-Gene	4332108