RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g12570.1 View Network Show in Genome Browser |
| Other Names | Os03g0226901,Os03g0226800 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 6657604-6668721 Nucleotide Length: 5364 |
| Protein-coding | LOC_Os03g12570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os02g55560 LOC_Os01g42630 LOC_Os03g03990 LOC_Os03g02010 LOC_Os02g15594 LOC_Os01g42460 LOC_Os01g34330 LOC_Os02g50840 LOC_Os02g39290 LOC_Os03g01970 More.. |
| Downstream Genes | LOC_Os06g48300 LOC_Os06g33549 LOC_Os10g17770 LOC_Os04g56450 LOC_Os04g37904 LOC_Os07g46590 LOC_Os07g31450 LOC_Os07g32380 LOC_Os11g34300 LOC_Os07g43360 LOC_Os06g08480 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR443 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g12570.1 |
| Rice Genome Annotation | LOC_Os03g12570.1 |
| Ricechip | LOC_Os03g12570.1 |
| KEGG | osa:9268745 osa:4332128 dosa:Os03t0226901-00dosa:Os03t0226800-01 |
| Entrez-Gene | 92687459270394 |