RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g12610.1 View Network Show in Genome Browser |
| Other Names | Os03g0227300 |
| Description | DNA polymerase I, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 6698273-6706333 Nucleotide Length: 1266 |
| Protein-coding | LOC_Os03g12610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56940 LOC_Os03g10780 LOC_Os01g25880 LOC_Os01g53150 LOC_Os01g54910 LOC_Os02g18450 LOC_Os01g14040 LOC_Os01g49190 |
| Downstream Genes | LOC_Os05g46270 LOC_Os03g15033 LOC_Os09g35000 LOC_Os08g01130 LOC_Os03g60180 LOC_Os03g13000 LOC_Os06g43610 LOC_Os08g21330 LOC_Os10g17280 LOC_Os06g02980 LOC_Os03g44780 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812a osa-miR812b osa-miR812c osa-miR812d osa-miR812e osa-miR812o-5p osa-miR812s osa-miR812f osa-miR812k osa-miR812l osa-miR812m osa-miR812p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g12610.1 |
| Rice Genome Annotation | LOC_Os03g12610.1 |
| Ricechip | LOC_Os03g12610.1 |
| KEGG | osa:4332131 dosa:Os03t0227300-01 |
| Entrez-Gene | 4332131 |