RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g12860.1 View Network Show in Genome Browser
Other Names	Os03g0231150,Os03g0231000
Description	homeobox associated leucine zipper, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 6931709-6933328 Nucleotide Length: 879
Protein-coding	LOC_Os03g12860

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g14840 LOC_Os01g55200 LOC_Os02g17970 LOC_Os02g55970 LOC_Os01g45990 LOC_Os01g11250 LOC_Os01g52070 LOC_Os02g07730 LOC_Os02g07900 LOC_Os01g50010 LOC_Os02g02424 More..
Downstream Genes	LOC_Os06g04870 LOC_Os08g04270 LOC_Os06g04850 LOC_Os06g07830 LOC_Os08g04290 LOC_Os07g07910 LOC_Os10g23090 LOC_Os06g14310 LOC_Os06g45440 LOC_Os05g35410 LOC_Os10g26500 More..

miRNA Regulations
miRNAs	osa-miR160e-3p

Database Links
Gramene	LOC_Os03g12860.1
Rice Genome Annotation	LOC_Os03g12860.1
Ricechip	LOC_Os03g12860.1
KEGG	osa:4332147 dosa:Os03t0231150-00 dosa:Os03t0231000-00
Entrez-Gene	4347687