RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g12910.1 View Network Show in Genome Browser |
| Other Names | Os03g0231800 |
| Description | squalene monooxygenase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 6957632-6962594 Nucleotide Length: 1842 |
| Protein-coding | LOC_Os03g12910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11300 LOC_Os02g01920 LOC_Os01g11340 LOC_Os02g32490 LOC_Os01g11270 LOC_Os01g11280 LOC_Os03g05900 LOC_Os01g04260 LOC_Os02g32120 LOC_Os02g04710 LOC_Os01g18860 More.. |
| Downstream Genes | LOC_Os08g40180 LOC_Os12g43670 LOC_Os05g34770 LOC_Os09g31970 LOC_Os04g33190 LOC_Os05g25310 LOC_Os08g43170 LOC_Os10g37210 LOC_Os03g62260 LOC_Os11g32240 LOC_Os10g37420 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00909 rn01100 rn01110 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g12910.1 |
| Rice Genome Annotation | LOC_Os03g12910.1 |
| Ricechip | LOC_Os03g12910.1 |
| KEGG | osa:4332153 dosa:Os03t0231800-02 |
| Entrez-Gene | 4332153 |