RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g13400.1 View Network Show in Genome Browser |
| Other Names | Os03g0237250 |
| Description | ZOS3-06 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 7237162-7241445 Nucleotide Length: 1317 |
| Protein-coding | LOC_Os03g13400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g58730 LOC_Os02g20850 LOC_Os02g02840 LOC_Os02g50860 LOC_Os01g12900 |
| Downstream Genes | LOC_Os06g12790 LOC_Os05g43820 LOC_Os08g30740 |
| Reference | |
|---|---|
| PubMed | 23124325 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g13400.1 |
| Rice Genome Annotation | LOC_Os03g13400.1 |
| Ricechip | LOC_Os03g13400.1 |
| KEGG | osa:9270511 dosa:Os03t0237250-00 |
| Entrez-Gene | 9270511 |