RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g13540.1 View Network Show in Genome Browser |
| Other Names | Os03g0238600 |
| Description | Ser/Thr protein phosphatase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 7322330-7325484 Nucleotide Length: 1020 |
| Protein-coding | LOC_Os03g13540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g16550 LOC_Os01g49690 LOC_Os02g12580 LOC_Os01g66920 LOC_Os02g57450 LOC_Os01g58640 LOC_Os03g11530 LOC_Os02g10640 LOC_Os02g30420 LOC_Os02g43600 |
| Downstream Genes | LOC_Os07g48840 LOC_Os07g02090 LOC_Os03g15430 LOC_Os03g27950 LOC_Os09g11230 LOC_Os06g37660 LOC_Os03g16110 LOC_Os05g11550 LOC_Os07g17280 LOC_Os12g38770 LOC_Os09g32840 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | NADBIOSYNTHESISII |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g13540.1 |
| Rice Genome Annotation | LOC_Os03g13540.1 |
| Ricechip | LOC_Os03g13540.1 |
| KEGG | osa:4332195 dosa:Os03t0238600-01 |
| Entrez-Gene | 4332195 |