RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g14540.1 View Network Show in Genome Browser |
| Other Names | Os03g0249500 |
| Description | UDP-glucuronate 4-epimerase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 7889242-7891358 Nucleotide Length: 1455 |
| Protein-coding | LOC_Os03g14540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55440 LOC_Os02g08300 |
| Downstream Genes | LOC_Os03g55070 LOC_Os03g31210 LOC_Os12g25690 LOC_Os08g23180 LOC_Os03g40720 LOC_Os04g49250 LOC_Os12g25700 LOC_Os04g42620 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00051 rn00520 rn01100 rn00500 rn00052 rn01110 |
| Metacyc Pathways | PWY-2582 DTDPRHAMSYN-PWY PWY-66 GDPRHAMSYN-PWY PWY-6415 PWY-4861 UDPNACETYLGALSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g14540.1 |
| Rice Genome Annotation | LOC_Os03g14540.1 |
| Ricechip | LOC_Os03g14540.1 |
| KEGG | osa:4332258 dosa:Os03t0249500-01 |
| Entrez-Gene | 4332258 |