RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g15290.1 View Network Show in Genome Browser |
| Other Names | Os03g0258500 |
| Description | beclin-1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 8369347-8370978 Nucleotide Length: 1632 |
| Protein-coding | LOC_Os03g15290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55340 LOC_Os02g16550 LOC_Os02g55300 LOC_Os03g07080 LOC_Os03g09140 LOC_Os02g47440 |
| Downstream Genes | LOC_Os05g08810 LOC_Os05g34940 LOC_Os08g21590 LOC_Os03g58700 LOC_Os03g16130 LOC_Os07g31370 LOC_Os10g27230 LOC_Os09g24990 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g15290.1 |
| Rice Genome Annotation | LOC_Os03g15290.1 |
| Ricechip | LOC_Os03g15290.1 |
| KEGG | osa:9271973 dosa:Os03t0258500-00 |
| Entrez-Gene | 9271973 |