RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g15350.1 View Network Show in Genome Browser |
| Other Names | Os03g0259300 |
| Description | Sel1 repeat domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 8398817-8405867 Nucleotide Length: 2085 |
| Protein-coding | LOC_Os03g15350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11440 LOC_Os01g62244 LOC_Os01g16930 LOC_Os02g51430 LOC_Os02g50360 LOC_Os02g05340 LOC_Os02g02410 LOC_Os01g60230 LOC_Os02g17970 LOC_Os02g36710 LOC_Os03g13970 More.. |
| Downstream Genes | LOC_Os06g19680 LOC_Os09g17840 LOC_Os09g17830 LOC_Os05g38550 LOC_Os05g40330 LOC_Os06g09330 LOC_Os04g38620 LOC_Os03g53310 LOC_Os06g48640 LOC_Os09g15750 LOC_Os08g40180 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR1436 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g15350.1 |
| Rice Genome Annotation | LOC_Os03g15350.1 |
| Ricechip | LOC_Os03g15350.1 |
| KEGG | osa:4332310 dosa:Os03t0259300-01 |
| Entrez-Gene | 4332310 |