RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g16220.1 View Network Show in Genome Browser |
| Other Names | Os03g0269000 |
| Description | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 8945063-8947981 Nucleotide Length: 816 |
| Protein-coding | LOC_Os03g16220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g16210 LOC_Os02g30714 LOC_Os02g30690 LOC_Os01g05840 LOC_Os03g02460 LOC_Os02g10320 LOC_Os01g66720 LOC_Os01g46200 |
| Downstream Genes | LOC_Os03g16230 LOC_Os12g43740 LOC_Os04g32070 LOC_Os11g07930 LOC_Os11g07922 LOC_Os03g24600 LOC_Os12g41590 LOC_Os12g27830 LOC_Os05g51670 LOC_Os11g30560 LOC_Os03g18590 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812g osa-miR812h osa-miR812i osa-miR812j osa-miR812f osa-miR812p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5078 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5082 PWY-5076 PWY-5079 PWY-5057 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g16220.1 |
| Rice Genome Annotation | LOC_Os03g16220.1 |
| Ricechip | LOC_Os03g16220.1 |
| KEGG | osa:4332376 dosa:Os03t0269000-01 |
| Entrez-Gene | 4332376 |