RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g16430.2 View Network Show in Genome Browser |
| Other Names | Os03g0271100 |
| Description | RNA polymerase sigma factor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9064856-9068078 Nucleotide Length: 1032 |
| Protein-coding | LOC_Os03g16430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g09590 LOC_Os02g13360 |
| Downstream Genes | LOC_Os07g34640 LOC_Os08g10649 LOC_Os05g49220 LOC_Os03g46640 LOC_Os06g01400 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g16430.2 |
| Rice Genome Annotation | LOC_Os03g16430.2 |
| Ricechip | LOC_Os03g16430.2 |
| KEGG | osa:4332388 dosa:Os03t0271100-01 |
| Entrez-Gene | 4332388 |