RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g16824.1 View Network Show in Genome Browser |
| Other Names | Os03g0275900 |
| Description | spotted leaf 11, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9329407-9335088 Nucleotide Length: 2181 |
| Protein-coding | LOC_Os03g16824 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005102 | receptor binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52370 |
| Downstream Genes | LOC_Os09g36550 LOC_Os12g24550 LOC_Os12g38110 LOC_Os04g59494 LOC_Os05g28510 LOC_Os03g18350 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5497 osa-miR6248 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g16824.1 |
| Rice Genome Annotation | LOC_Os03g16824.1 |
| Ricechip | LOC_Os03g16824.1 |
| KEGG | osa:4332412 dosa:Os03t0275900-01 |
| Entrez-Gene | 4332412 |