RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g17020.1 View Network Show in Genome Browser |
| Other Names | Os03g0278400 |
| Description | GTPase-activating protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 9454830-9458933 Nucleotide Length: 1362 |
| Protein-coding | LOC_Os03g17020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59790 LOC_Os01g16030 LOC_Os01g51200 LOC_Os02g09130 LOC_Os01g38950 LOC_Os01g68950 LOC_Os01g68940 LOC_Os02g38060 LOC_Os01g08760 LOC_Os02g27950 LOC_Os02g48740 More.. |
| Downstream Genes | LOC_Os05g41060 LOC_Os11g28340 LOC_Os08g15040 LOC_Os03g59740 LOC_Os03g63710 LOC_Os07g12200 LOC_Os07g12170 LOC_Os05g45310 LOC_Os11g34860 LOC_Os06g43680 LOC_Os12g34380 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g17020.1 |
| Rice Genome Annotation | LOC_Os03g17020.1 |
| Ricechip | LOC_Os03g17020.1 |
| KEGG | osa:4332427 dosa:Os03t0278400-01 |
| Entrez-Gene | 4332427 |